Transcript: LINC00526:1

Basic information

LNCipedia transcript ID: LINC00526:1 
HGNC Gene Symbol: LINC00526    
HGNC Full Gene Name: long intergenic non-protein coding RNA 526
Ensembl Gene ID: ENSG00000264575
Ensembl Transcript ID: ENST00000581067
Location (hg38): chr18:5236724-5238598
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1875 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000581067.1; LINC00526-001; OTTHUMT00000443370.1; NONHSAT057059
Alternative gene names: ENSG00000264575.1; LINC00526; OTTHUMG00000178804.1; MGC17515; HsT959


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.7543 non-coding 
CPAT coding probability 22.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00526:1 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C18orf42-1:1
4.0 LINC00526:1
4.1 LINC00526:1
5.0 LINC00526:1
5.1 LINC00526:1
5.2 LINC00526:1