Transcript: LINC00526:3

Basic information

LNCipedia transcript ID: LINC00526:3 
LNCipedia gene ID: LINC00526
Ensembl Gene ID: ENSG00000265091
Ensembl Transcript ID: ENST00000579933
Location (hg38): chr18:5232876-5238526
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 977 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000501139; ENST00000579933.1; RP11-835E18.5-001; OTTHUMT00000444199.1; NONHSAT057054
Alternative gene names: ENSG00000245452; ENSG00000265091.1; RP11-835E18.5; OTTHUMG00000178981.1; ENSG00000265091.5; MGC17515; HsT959; AP001496.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.2955 non-coding 
CPAT coding probability 0.06% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00526:3 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C18orf42-1:2
3.1 lnc-C18orf42-1:3
4.0 LINC00526:3
4.1 LINC00526:3
5.0 LINC00526:3
5.1 LINC00526:3
5.2 LINC00526:3