Transcript: LINC00529:1

Basic information

LNCipedia transcript ID: LINC00529:1 
HGNC Gene Symbol: LINC00529    
HGNC Full Gene Name: long intergenic non-protein coding RNA 529
Ensembl Gene ID: ENSG00000236827
Ensembl Transcript ID: ENST00000443854
Location (hg38): chr8:11247626-11267865
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 241 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000443854.1; LINC00529-001; OTTHUMT00000383957.1; NONHSAT125043
Alternative gene names: ENSG00000236827.1; LINC00529; OTTHUMG00000165427.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -108.7203 non-coding 
CPAT coding probability 0.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00529:1 no no no no

Available literature

  1. Appel (2002), Physical and transcriptional map of the critical region for keratolytic winter erythema (KWE) on chromosome 8p22-p23 between D8S550 and D8S1759., Eur. J. Hum. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-LINC00529-1:1
4.0 LINC00529:1
4.1 LINC00529:1
5.0 LINC00529:1
5.1 LINC00529:1
5.2 LINC00529:1