Transcript: LINC00533:2

Basic information

LNCipedia transcript ID: LINC00533:2 
HGNC Gene Symbol: LINC00533    
HGNC Full Gene Name: long intergenic non-protein coding RNA 533
Ensembl Gene ID: ENSG00000235570
Ensembl Transcript ID: ENST00000456103
Location (hg38): chr6:28648286-28649066
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 537 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011472; ENST00000456103; ENST00000456103.1; LINC00533-001; OTTHUMT00000043560.1; NONHSAT108476
Alternative gene names: XLOC_005663; linc-SCAND3-4; ENSG00000235570; C6orf38; ENSG00000235570.1; LINC00533; OTTHUMG00000016245.1; bA373N24.1; C6orf39


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.3095 non-coding 
CPAT coding probability 1.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00533:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SCAND3-1:1
3.1 lnc-SCAND3-1:1
4.0 LINC00533:2
4.1 LINC00533:2
5.0 LINC00533:2
5.1 LINC00533:2
5.2 LINC00533:2