Transcript: LINC00536:2

Basic information

LNCipedia transcript ID: LINC00536:2 
LNCipedia gene ID: LINC00536
Location (hg38): chr8:116260345-116261534
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 372 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT128369; FPKM1_group_32050_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -141.1897 non-coding 
CPAT coding probability 4.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00536:2 no no no no

Available literature

  1. Li (2015), Annular pancreas in Trichorhinophalangeal syndrome type II with 8q23.3-q24.12 interstitial deletion., Mol Cytogenet
  2. Crippa (2014), New case of trichorinophalangeal syndrome-like phenotype with a de novo t(2;8)(p16.1;q23.3) translocation which does not disrupt the TRPS1 gene., BMC Med. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRPS1-1:2
4.0 LINC00536:2
4.1 LINC00536:2
5.0 LINC00536:2
5.1 LINC00536:2
5.2 LINC00536:2