Transcript: LINC00536:3

Basic information

LNCipedia transcript ID: LINC00536:3 
LNCipedia gene ID: LINC00536
Location (hg38): chr8:116120677-116403766
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1654 bp
Exons: 8
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000249917.2|MICT00000349927.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -110.185 non-coding 
CPAT coding probability 1.14% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00536:3 no no no no

Available literature

  1. Li (2015), Annular pancreas in Trichorhinophalangeal syndrome type II with 8q23.3-q24.12 interstitial deletion., Mol Cytogenet
  2. Crippa (2014), New case of trichorinophalangeal syndrome-like phenotype with a de novo t(2;8)(p16.1;q23.3) translocation which does not disrupt the TRPS1 gene., BMC Med. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00536:3
5.0 LINC00536:3
5.1 LINC00536:3
5.2 LINC00536:3