Transcript: LINC00539:6

Basic information

LNCipedia transcript ID: LINC00539:6 
LNCipedia gene ID: LINC00539
RefSeq ID: NR_103841
Location (hg38): chr13:21303512-21344859
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 588 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT032366; NR_103841; NR_103841.1
Alternative gene names: ; LINC00539


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 9.7501 non-coding 
CPAT coding probability 12.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00539:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AL136219.1-2:7
4.0 LINC00539:6
4.1 LINC00539:6
5.0 LINC00539:6
5.1 LINC00539:6
5.2 LINC00539:6