Transcript: LINC00556:3

Basic information

LNCipedia transcript ID: LINC00556:3 
HGNC Gene Symbol: LINC00556    
HGNC Full Gene Name: long intergenic non-protein coding RNA 556
Ensembl Gene ID: ENSG00000260131
Ensembl Transcript ID: ENST00000569603
Location (hg38): chr13:20181531-20181942
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 412 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569603.1; RP11-264J4.9-001; OTTHUMT00000431317.1; NONHSAT032310
Alternative gene names: ENSG00000260131.1; RP11-264J4.9; OTTHUMG00000175961.1; LINC00556


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -145.8109 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00556:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZMYM2-4:1
4.0 lnc-ZMYM2-4:1
4.1 lnc-ZMYM2-4:1
5.0 lnc-ZMYM2-4:1
5.1 LINC00556:2
5.2 LINC00556:3