Transcript: LINC00562:10

Basic information

LNCipedia transcript ID: LINC00562:10 
LNCipedia gene ID: LINC00562
Location (hg38): chr13:47905329-47907357
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 215 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000435617; ENST00000435617.1; LINC00444-001; OTTHUMT00000044840.1; NONHSAT033692
Alternative gene names: ENSG00000234689; RP11-279N8.2; ENSG00000234689.1; LINC00444; OTTHUMG00000016886.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.303 non-coding 
CPAT coding probability 0.11% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00562:10 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SUCLA2-2:1
3.1 lnc-SUCLA2-3:1
4.0 LINC00444:4
4.1 LINC00444:4
5.0 LINC00444:4
5.1 LINC00562:5
5.2 LINC00562:10