Transcript: LINC00562:8

Basic information

LNCipedia transcript ID: LINC00562:8 
LNCipedia gene ID: LINC00562
Location (hg38): chr13:47930155-47932622
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2468 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000566385.1; RP11-279N8.3-001; OTTHUMT00000431361.1; NONHSAT033693
Alternative gene names: ENSG00000260388.1; RP11-279N8.3; OTTHUMG00000175994.1; LINC00562;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -20.3231 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00562:8 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SUCLA2-2:1
4.0 LINC00444:2
4.1 LINC00444:2
5.0 LINC00444:2
5.1 LINC00562:3
5.2 LINC00562:8