Transcript: LINC00562:9

Basic information

LNCipedia transcript ID: LINC00562:9 
HGNC Gene Symbol: LINC00562    
HGNC Full Gene Name: long intergenic non-protein coding RNA 562
Ensembl Gene ID: ENSG00000260388
Ensembl Transcript ID: ENST00000566385
RefSeq ID: NR_047492
Location (hg38): chr13:47930153-47932622
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2470 bp
Exons: 1
Sources: Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_047492; ENST00000566385.2; NR_047492.1
Alternative gene names: ENSG00000260388.2; LINC00562;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -20.3231 non-coding 
CPAT coding probability 0.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00562:9 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SUCLA2-3:3
4.0 LINC00444:3
4.1 LINC00444:3
5.0 LINC00444:3
5.1 LINC00562:4
5.2 LINC00562:9