Transcript: LINC00563:3

Basic information

LNCipedia transcript ID: LINC00563:3 
HGNC Gene Symbol: LINC00563    
HGNC Full Gene Name: long intergenic non-protein coding RNA 563
Ensembl Gene ID: ENSG00000261097
Ensembl Transcript ID: ENST00000566370
RefSeq ID: NR_047493
Location (hg38): chr13:46296445-46297844
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1400 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000566370.1; LINC00563-001; OTTHUMT00000431353.1; NONHSAT033641; NR_047493; NR_047493.1
Alternative gene names: ENSG00000261097.1; LINC00563; OTTHUMG00000175991.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -153.3208 non-coding 
CPAT coding probability 1.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00563:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KIAA0226L-2:1
4.0 lnc-KIAA0226L-2:1
4.1 lnc-KIAA0226L-2:1
5.0 lnc-KIAA0226L-2:1
5.1 LINC00563:2
5.2 LINC00563:3