Transcript: LINC00572:1

Basic information

LNCipedia transcript ID: LINC00572:1 
HGNC Gene Symbol: LINC00572    
HGNC Full Gene Name: long intergenic non-protein coding RNA 572
Ensembl Gene ID: ENSG00000224405
Ensembl Transcript ID: ENST00000450264
RefSeq ID: NR_047501
Location (hg38): chr13:29918647-29926651
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 575 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00021616; ENST00000450264.1; LINC00572-001; OTTHUMT00000044343.1; NONHSAT032756; NR_047501; NR_047501.1
Alternative gene names: XLOC_010552; linc-UBL3-3; ENSG00000224405.1; LINC00572; OTTHUMG00000016662.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.9824 non-coding 
CPAT coding probability 1.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00572:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-UBL3-1:1
3.1 lnc-UBL3-1:1
4.0 LINC00572:1
4.1 LINC00572:1
5.0 LINC00572:1
5.1 LINC00572:1
5.2 LINC00572:1