Transcript: LINC00574:4

Basic information

LNCipedia transcript ID: LINC00574:4 
HGNC Gene Symbol: LINC00574    
HGNC Full Gene Name: long intergenic non-protein coding RNA 574
Ensembl Gene ID: ENSG00000231690
Ensembl Transcript ID: ENST00000420557
Location (hg38): chr6:169790321-169802873
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2318 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000420557; ENST00000420557.2; LINC00574-001; OTTHUMT00000043246.2
Alternative gene names: ENSG00000231690; C6orf208; ENSG00000231690.2; LINC00574; OTTHUMG00000016071.2; FLJ13162; dJ182D15.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -9.8509 non-coding 
CPAT coding probability 14.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00574:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C6orf70-1:1
3.1 lnc-C6orf70-1:1
4.0 LINC00574:4
4.1 LINC00574:4
5.0 LINC00574:4
5.1 LINC00574:4
5.2 LINC00574:4