Transcript: LINC00575:2

Basic information

LNCipedia transcript ID: LINC00575:2 
HGNC Gene Symbol: LINC00575    
HGNC Full Gene Name: long intergenic non-protein coding RNA 575
Ensembl Gene ID: ENSG00000231782
Ensembl Transcript ID: ENST00000426551
RefSeq ID: NR_024087
Location (hg38): chr4:82613113-82621437
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 910 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000426551; ENST00000426551.1; LINC00575-001; OTTHUMT00000363866.2; NONHSAT097169; NR_024087; ENST00000426551.5; NR_024087.1
Alternative gene names: ENSG00000231782; RP11-791G16.6; ENSG00000231782.2; LINC00575; OTTHUMG00000161121.2; ENSG00000231782.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -23.3238 non-coding 
CPAT coding probability 3.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00575:2 no no no no

Available literature

  1. Schulz (2004), Identifying differentially expressed genes in the mammalian retina and the retinal pigment epithelium by suppression subtractive hybridization., Cytogenet. Genome Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SCD5-1:2
3.1 lnc-SCD5-1:1
4.0 LINC00575:2
4.1 LINC00575:2
5.0 LINC00575:2
5.1 LINC00575:2
5.2 LINC00575:2