Transcript: LINC00578:16

Basic information

LNCipedia transcript ID: LINC00578:16 
LNCipedia gene ID: LINC00578
Ensembl Gene ID: ENSG00000228561
Ensembl Transcript ID: ENST00000423466
Location (hg38): chr3:177683627-177691250
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 587 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT093354; ENST00000423466.2
Alternative gene names: ENSG00000228561.2; RP11-114M1.1; ; AC026355.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -273.0829 non-coding 
CPAT coding probability 1.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00578:16 no no no no

Available literature

  1. Ye (2017), Intergenic variants may predispose to major depression disorder through regulation of long non-coding RNA expression., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCNMB2-4:2
4.0 lnc-KCNMB2-4:2
4.1 LINC00578:16
5.0 LINC00578:16
5.1 LINC00578:16
5.2 LINC00578:16