Transcript: LINC00578:3

Basic information

LNCipedia transcript ID: LINC00578:3 
LNCipedia gene ID: LINC00578
Location (hg38): chr3:177441943-177543222
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 291 bp
Exons: 3
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00007045; NONHSAT093345
Alternative gene names: XLOC_002931; linc-KCNMB2-5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -65.7293 non-coding 
CPAT coding probability 2.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00578:3 no no no no

Available literature

  1. Ye (2017), Intergenic variants may predispose to major depression disorder through regulation of long non-coding RNA expression., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNMB2-5:2
3.1 lnc-KCNMB2-5:2
4.0 LINC00578:3
4.1 LINC00578:3
5.0 LINC00578:3
5.1 LINC00578:3
5.2 LINC00578:3