Transcript: LINC00578:4

Basic information

LNCipedia transcript ID: LINC00578:4 
HGNC Gene Symbol: LINC00578    
HGNC Full Gene Name: long intergenic non-protein coding RNA 578
Ensembl Gene ID: ENSG00000228221
Ensembl Transcript ID: ENST00000439009
Location (hg38): chr3:177441964-177752305
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 542 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000439009; ENST00000439009.1; LINC00578-002; OTTHUMT00000348101.1; NONHSAT093346
Alternative gene names: ENSG00000228221; RP11-335L9.1; ENSG00000228221.1; LINC00578; OTTHUMG00000157222.3; ENSG00000228221.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -164.2247 non-coding 
CPAT coding probability 5.79% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00578:4 no no no no

Available literature

  1. Ye (2017), Intergenic variants may predispose to major depression disorder through regulation of long non-coding RNA expression., Gene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KCNMB2-5:3
3.1 lnc-KCNMB2-5:3
4.0 LINC00578:4
4.1 LINC00578:4
5.0 LINC00578:4
5.1 LINC00578:4
5.2 LINC00578:4