Transcript: LINC00581:2

Basic information

LNCipedia transcript ID: LINC00581:2 
HGNC Gene Symbol: LINC00581    
HGNC Full Gene Name: long intergenic non-protein coding RNA 581
RefSeq ID: NR_103790
Location (hg38): chr6:21486061-21511892
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 987 bp
Exons: 4
Sources: NONCODE v4; Refseq - Dec 2014; long non-coding rna db - lncrnadb.com; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT108037; NR_103790; NR_103790.1
Alternative gene names: BX118339; ; LINC00581


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -57.9203 non-coding 
CPAT coding probability 1.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00581:2 no no no no

Available literature

  1. Henshall (2015), Epigenetics and Epilepsy., Cold Spring Harb Perspect Med
  2. Vandeweyer (2012), A de novo balanced t(2;6)(p15;p22.3) in a patient with West Syndrome disrupts a lnc-RNA., Epilepsy Res.
  3. Cabili (2011), Integrative annotation of human large intergenic noncoding RNAs reveals global properties and specific subclasses., Genes Dev.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PRL-6:3
4.0 LINC00581:2
4.1 LINC00581:2
5.0 LINC00581:2
5.1 LINC00581:2
5.2 LINC00581:2