Transcript: LINC00587:1

Basic information

LNCipedia transcript ID: LINC00587:1 
HGNC Gene Symbol: LINC00587    
HGNC Full Gene Name: long intergenic non-protein coding RNA 587
Ensembl Gene ID: ENSG00000204250
Ensembl Transcript ID: ENST00000374801
Location (hg38): chr9:102519636-102657514
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 590 bp
Exons: 5
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT133767; ENST00000374801.3
Alternative gene names: ENSG00000204250.3; LINC00587; bA785H23.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -31.5822 non-coding 
CPAT coding probability 12.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00587:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C9orf107-3:1
4.0 LINC00587:1
4.1 LINC00587:1
5.0 LINC00587:1
5.1 LINC00587:1
5.2 LINC00587:1