Transcript: LINC00589:2

Basic information

LNCipedia transcript ID: LINC00589:2 
LNCipedia gene ID: LINC00589
Ensembl Gene ID: ENSG00000248964
Ensembl Transcript ID: ENST00000507496
RefSeq ID: NR_125817
Location (hg38): chr8:29815004-29828504
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1867 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00014556; ENST00000507496; ENST00000507496.1; RP11-94H18.1-001; OTTHUMT00000375702.1; NONHSAT125832; NR_125817; ENST00000507496.5; NR_125817.1
Alternative gene names: XLOC_007040; linc-DUSP4-3; ENSG00000248964; RP11-94H18.1; ENSG00000248964.2; OTTHUMG00000163812.2; ENSG00000248964.6; ; AC131254.1; LOC101929470


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -118.8069 non-coding 
CPAT coding probability 9.48% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00589:2 no no no no

Available literature

  1. Zhang (2018), Long noncoding RNA TSLNC8 is a tumor suppressor that inactivates the interleukin-6/STAT3 signaling pathway., Hepatology


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM66-1:2
3.1 lnc-TMEM66-1:2
4.0 LINC00589:2
4.1 LINC00589:2
5.0 LINC00589:2
5.1 LINC00589:2
5.2 LINC00589:2