Transcript: LINC00589:5

Basic information

LNCipedia transcript ID: LINC00589:5 
LNCipedia gene ID: LINC00589
RefSeq ID: NR_026765
Location (hg38): chr8:29721259-29748109
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1399 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000506121; ENST00000506121.2; LINC00589-001; OTTHUMT00000375643.1; NR_026765.1
Alternative gene names: ENSG00000251191; C8orf75; ENSG00000251191.2; LINC00589; OTTHUMG00000163800.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -14.9709 non-coding 
CPAT coding probability 0.89% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00589:5 no no no no

Available literature

  1. Zhang (2018), Long noncoding RNA TSLNC8 is a tumor suppressor that inactivates the interleukin-6/STAT3 signaling pathway., Hepatology


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM66-2:2
3.1 lnc-DUSP4-5:1
4.0 LINC00589:5
4.1 LINC00589:5
5.0 LINC00589:5
5.1 LINC00589:5
5.2 LINC00589:5