Transcript: LINC00589:8

Basic information

LNCipedia transcript ID: LINC00589:8 
HGNC Gene Symbol: LINC00589    
HGNC Full Gene Name: long intergenic non-protein coding RNA 589
Ensembl Gene ID: ENSG00000251191
Ensembl Transcript ID: ENST00000518623
Location (hg38): chr8:29673922-29735223
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 938 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000518623; ENST00000518623.1; LINC00589-002; OTTHUMT00000375647.1; NONHSAT125825; ENST00000518623.5
Alternative gene names: ENSG00000251191; C8orf75; ENSG00000251191.2; LINC00589; OTTHUMG00000163800.2; ENSG00000251191.3; ENSG00000251191.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -164.2742 non-coding 
CPAT coding probability 1.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00589:8 no no no no

Available literature

  1. Zhang (2018), Long noncoding RNA TSLNC8 is a tumor suppressor that inactivates the interleukin-6/STAT3 signaling pathway., Hepatology


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TMEM66-2:3
3.1 lnc-DUSP4-5:3
4.0 LINC00589:8
4.1 LINC00589:8
5.0 LINC00589:8
5.1 LINC00589:8
5.2 LINC00589:8