Transcript: LINC00599:8

Basic information

LNCipedia transcript ID: LINC00599:8 
HGNC Gene Symbol: LINC00599    
HGNC Full Gene Name: long intergenic non-protein coding RNA 599
Ensembl Gene ID: ENSG00000253230
Ensembl Transcript ID: ENST00000519461
RefSeq ID: NR_024281
Location (hg38): chr8:9900064-9903329
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2922 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; long non-coding rna db - lncrnadb.com; Ensembl release 83 - Dec 2015; Biogazelle lncRNA chip; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 64 - Sep 2011; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: LINC00599-001; ENST00000519461; OTTHUMT00000375046.1; ENST00000519461.1; NR_024281; NR_024281.1
Alternative gene names: LOC157627; ENSG00000253230; A930011O12Rik; ENSG00000253230.2; OTTHUMG00000163734.2; ENSG00000253230.6; LINC00599; RNCR3; RP11-403C10.2; ENSG00000253230.1; Rncr3; ENSG00000253230.8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -55.257 non-coding 
CPAT coding probability 5.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00599:8 no no no no

Available literature

  1. Shan (2016), Role of long non-coding RNA-RNCR3 in atherosclerosis-related vascular dysfunction., Cell Death Dis
  2. Mercer (2010), Long noncoding RNAs in neuronal-glial fate specification and oligodendrocyte lineage maturation., BMC Neurosci
  3. Cunningham (1997), Pulmonary agenesis: a predictor of ipsilateral malformations., Am. J. Med. Genet.
  4. Yu (1997), Large-scale concatenation cDNA sequencing., Genome Res.
  5. Andersson (1996), A "double adaptor" method for improved shotgun library construction., Anal. Biochem.
  6. Tsugaya (1991), A new technique of ureteric catheterization., Eur. Urol.
  7. Lilienthal (1965), An epidemiological study of chronic periodontal disease., Arch. Oral Biol.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-RP1L1-4:4
3.1 lnc-RP1L1-5:4
4.0 LINC00599:8
4.1 LINC00599:8
5.0 LINC00599:8
5.1 LINC00599:8
5.2 LINC00599:8