Transcript: LINC00603:1

Basic information

LNCipedia transcript ID: LINC00603:1 
LNCipedia gene ID: LINC00603
RefSeq ID: NR_104633
Location (hg38): chr5:40052291-40053324
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 562 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00009388; ENST00000507027; ENST00000507027.1; LINC00603-001; OTTHUMT00000367830.1; NONHSAT101136; NR_104633; NR_104633.1
Alternative gene names: XLOC_004351; linc-PTGER4-3; ENSG00000250048; RP11-758E17.2; ENSG00000250048.1; LINC00603; OTTHUMG00000162195.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -143.6048 non-coding 
CPAT coding probability 3.91% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00603:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTGER4-3:1
3.1 lnc-PTGER4-3:1
4.0 LINC00603:1
4.1 LINC00603:1
5.0 LINC00603:1
5.1 LINC00603:1
5.2 LINC00603:1