Transcript: LINC00604:1

Basic information

LNCipedia transcript ID: LINC00604:1 
HGNC Gene Symbol: LINC00604    
HGNC Full Gene Name: long intergenic non-protein coding RNA 604
Ensembl Gene ID: ENSG00000250585
Ensembl Transcript ID: ENST00000508437
Location (hg38): chr5:40260657-40267657
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 499 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009389; ENST00000508437; ENST00000508437.1; LINC00604-001; OTTHUMT00000367107.1; NONHSAT101138
Alternative gene names: XLOC_004352; linc-PTGER4-2; ENSG00000250585; CTD-2651L24.1; ENSG00000250585.1; LINC00604; OTTHUMG00000162074.1; ; ENSG00000250585.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -250.5511 non-coding 
CPAT coding probability 2.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00604:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTGER4-2:1
3.1 lnc-PTGER4-2:1
4.0 LINC00604:1
4.1 LINC00604:1
5.0 LINC00604:1
5.1 LINC00604:1
5.2 LINC00604:1