Transcript: LINC00606:1

Basic information

LNCipedia transcript ID: LINC00606:1 
HGNC Gene Symbol: LINC00606    
HGNC Full Gene Name: long intergenic non-protein coding RNA 606
Ensembl Gene ID: ENSG00000226567
Ensembl Transcript ID: ENST00000412578
RefSeq ID: NR_027102
Location (hg38): chr3:10759484-10764192
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2869 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00005392; ENST00000412578; ENST00000412578.1; LINC00606-001; OTTHUMT00000340198.1; NONHSAT087954; NR_027102; NR_027102.1
Alternative gene names: XLOC_003045; linc-ATP2B2-2; ENSG00000226567; AC018495.2; ENSG00000226567.1; LINC00606; OTTHUMG00000155455.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -117.6372 non-coding 
CPAT coding probability 12.02% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00606:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ATP2B2-2:1
3.1 lnc-ATP2B2-2:1
4.0 LINC00606:1
4.1 LINC00606:1
5.0 LINC00606:1
5.1 LINC00606:1
5.2 LINC00606:1