Transcript: LINC00608:11

Basic information

LNCipedia transcript ID: LINC00608:11 
LNCipedia gene ID: LINC00608
Location (hg38): chr2:218976284-218977921
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1555 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: TCONS_00002656; ENST00000419101; ENST00000419101.1; LINC00608-001; OTTHUMT00000336514.1
Alternative gene names: XLOC_001866; linc-FAM134A; ENSG00000236445; AC097468.5; ENSG00000236445.1; LINC00608; OTTHUMG00000154665.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.7738 non-coding 
CPAT coding probability 16.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00608:11 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDK5R2-1:7
3.1 lnc-CDK5R2-1:7
4.0 LINC00608:11
4.1 LINC00608:11
5.0 LINC00608:11
5.1 LINC00608:11
5.2 LINC00608:11