Transcript: LINC00608:12

Basic information

LNCipedia transcript ID: LINC00608:12 
HGNC Gene Symbol: LINC00608    
HGNC Full Gene Name: long intergenic non-protein coding RNA 608
Ensembl Gene ID: ENSG00000236445
Ensembl Transcript ID: ENST00000432733
Location (hg38): chr2:218976284-218979660
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2818 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000432733; ENST00000432733.1; LINC00608-002; OTTHUMT00000336515.1; NONHSAT076971
Alternative gene names: ENSG00000236445; AC097468.5; ENSG00000236445.1; LINC00608; OTTHUMG00000154665.1; ENSG00000236445.2; ENSG00000236445.4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.0689 non-coding 
CPAT coding probability 11.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00608:12 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDK5R2-1:8
3.1 lnc-CDK5R2-1:6
4.0 LINC00608:12
4.1 LINC00608:12
5.0 LINC00608:12
5.1 LINC00608:12
5.2 LINC00608:12