Transcript: LINC00609:12

Basic information

LNCipedia transcript ID: LINC00609:12 
LNCipedia gene ID: LINC00609
Ensembl Gene ID: ENSG00000258342
Ensembl Transcript ID: ENST00000550089
Location (hg38): chr14:35897982-36063743
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 477 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000550089.1; RP11-116N8.1-001; OTTHUMT00000409615.1; NONHSAT036401
Alternative gene names: ENSG00000258342.1; RP11-116N8.1; OTTHUMG00000170566.1; ; AL133304.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -21.0697 non-coding 
CPAT coding probability 4.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00609:12 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-BRMS1L-1:1
4.0 lnc-BRMS1L-1:1
4.1 LINC00609:12
5.0 LINC00609:12
5.1 LINC00609:12
5.2 LINC00609:12