Transcript: LINC00615:1

Basic information

LNCipedia transcript ID: LINC00615:1 
HGNC Gene Symbol: LINC00615    
HGNC Full Gene Name: long intergenic non-protein coding RNA 615
Ensembl Gene ID: ENSG00000196243
Ensembl Transcript ID: ENST00000546725
RefSeq ID: NR_038868
Location (hg38): chr12:90918023-90948669
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1406 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000546725; ENST00000546725.1; LINC00615-001; OTTHUMT00000407145.2; NONHSAT029852; NR_038868; NR_038868.1
Alternative gene names: ENSG00000196243; RP11-916O13.1; ENSG00000196243.4; LINC00615; OTTHUMG00000170071.2; ENSG00000196243.5; FLJ25378


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -3.3726 non-coding 
CPAT coding probability 59.77% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00615:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CLLU1.1-7:1
3.1 lnc-CLLU1.1-7:1
4.0 LINC00615:1
4.1 LINC00615:1
5.0 LINC00615:1
5.1 LINC00615:1
5.2 LINC00615:1