Transcript: LINC00616:7

Basic information

LNCipedia transcript ID: LINC00616:7 
HGNC Gene Symbol: LINC00616    
HGNC Full Gene Name: long intergenic non-protein coding RNA 616
Ensembl Gene ID: ENSG00000248307
Ensembl Transcript ID: ENST00000505874
Location (hg38): chr4:138032354-138091039
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 260 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000505874; ENST00000505874.1; LINC00616-002; OTTHUMT00000364374.1; NONHSAT098413
Alternative gene names: ENSG00000248307; RP11-8P17.1; ENSG00000248307.1; LINC00616; OTTHUMG00000161281.1; ENSG00000248307.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -204.3283 non-coding 
CPAT coding probability 0.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00616:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC7A11-3:4
3.1 lnc-SLC7A11-2:4
4.0 LINC00616:7
4.1 LINC00616:7
5.0 LINC00616:7
5.1 LINC00616:7
5.2 LINC00616:7