Transcript: LINC00620:1

Basic information

LNCipedia transcript ID: LINC00620:1 
LNCipedia gene ID: LINC00620
Location (hg38): chr3:13625722-13721635
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 994 bp
Exons: 6
Sources: Nielsen et al.,2014
Alternative transcript names: l_2313_NR_027103
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.0626 non-coding 
CPAT coding probability 2.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00620:1 no no no no

Available literature

  1. Senchenko (2013), Novel tumor suppressor candidates on chromosome 3 revealed by NotI-microarrays in cervical cancer., Epigenetics
  2. Alliey-Rodriguez (2011), Genome-wide association study of personality traits in bipolar patients., Psychiatr. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FBLN2-1:4
4.0 LINC00620:1
4.1 LINC00620:1
5.0 LINC00620:1
5.1 LINC00620:1
5.2 LINC00620:1