Transcript: LINC00620:6

Basic information

LNCipedia transcript ID: LINC00620:6 
HGNC Gene Symbol: LINC00620    
HGNC Full Gene Name: long intergenic non-protein coding RNA 620
Ensembl Gene ID: ENSG00000224514
Ensembl Transcript ID: ENST00000419618
Location (hg38): chr3:13650721-13746637
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 996 bp
Exons: 6
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419618.2
Alternative gene names: ENSG00000224514.2; LINC00620;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -78.5045 non-coding 
CPAT coding probability 7.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00620:6 no no no no

Available literature

  1. Senchenko (2013), Novel tumor suppressor candidates on chromosome 3 revealed by NotI-microarrays in cervical cancer., Epigenetics
  2. Alliey-Rodriguez (2011), Genome-wide association study of personality traits in bipolar patients., Psychiatr. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC00620:6
4.1 LINC00620:6
5.0 LINC00620:6
5.1 LINC00620:6
5.2 LINC00620:6