Transcript: LINC00623:22

Basic information

LNCipedia transcript ID: LINC00623:22 
HGNC Gene Symbol: LINC00623    
HGNC Full Gene Name: long intergenic non-protein coding RNA 623
Ensembl Gene ID: ENSG00000226067
Ensembl Transcript ID: ENST00000621058
Location (hg38): chr1:120913275-120953463
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 767 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000621058.4
Alternative gene names: ENSG00000226067.6; LINC00623;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 49.2726 non-coding 
CPAT coding probability 1.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00623:22 no no no no

Available literature

  1. Yan (2017), Long non-coding RNA ENST00000457645 reverses cisplatin resistance in CP70 ovarian cancer cells., Genet. Mol. Res.
  2. Wang (2015), Multidrug-Resistance Related Long Non-Coding RNA Expression Profile Analysis of Gastric Cancer., PLoS ONE
  3. Wang (2014), [Effect of curcumin on radiosensitization of CNE-2 cells and its mechanism]., Zhongguo Zhong Yao Za Zhi


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC00623:22
4.1 LINC00623:22
5.0 LINC00623:22
5.1 LINC00623:22
5.2 LINC00623:22