Transcript: LINC00623:33

Basic information

LNCipedia transcript ID: LINC00623:33 
LNCipedia gene ID: LINC00623
Location (hg38): chr1:120952590-120953458
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 554 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000457645; ENST00000457645.1; BX248398.1-013; OTTHUMT00000038296.1; NONHSAT005783
Alternative gene names: ENSG00000235398; BX248398.1; ENSG00000235398.1; OTTHUMG00000013624.4; ENSG00000235398.4; LINC00623;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -18.9657 non-coding 
CPAT coding probability 2.35% non-coding 
Bazzini small ORFs 1 coding 
seqAAMEREPERAPNSRTYCSPRITSSRTRQKTRRLGTLKSLEE
covF1Prop0.135135135
orfFrame6.158640473

In stringent set: no

Locus conservation

Locus conservation?
LINC00623:33 no no no no

Available literature

  1. Yan (2017), Long non-coding RNA ENST00000457645 reverses cisplatin resistance in CP70 ovarian cancer cells., Genet. Mol. Res.
  2. Wang (2015), Multidrug-Resistance Related Long Non-Coding RNA Expression Profile Analysis of Gastric Cancer., PLoS ONE
  3. Wang (2014), [Effect of curcumin on radiosensitization of CNE-2 cells and its mechanism]., Zhongguo Zhong Yao Za Zhi


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPIAL4B-1:15
3.1 lnc-PPIAL4B-1:15
4.0 LINC00623:33
4.1 LINC00623:33
5.0 LINC00623:33
5.1 LINC00623:33
5.2 LINC00623:33