Transcript: LINC00623:39

Basic information

LNCipedia transcript ID: LINC00623:39 
LNCipedia gene ID: LINC00623
RefSeq ID: NR_024584
Location (hg38): chr1:120912238-120955811
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3124 bp
Exons: 4
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_024584.2
Alternative gene names: LINC00623


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 47.0958 non-coding 
CPAT coding probability 10.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00623:39 no no no no

Available literature

  1. Yan (2017), Long non-coding RNA ENST00000457645 reverses cisplatin resistance in CP70 ovarian cancer cells., Genet. Mol. Res.
  2. Wang (2015), Multidrug-Resistance Related Long Non-Coding RNA Expression Profile Analysis of Gastric Cancer., PLoS ONE
  3. Wang (2014), [Effect of curcumin on radiosensitization of CNE-2 cells and its mechanism]., Zhongguo Zhong Yao Za Zhi


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 LINC00623:39
5.1 LINC00623:39
5.2 LINC00623:39