Transcript: LINC00623:45

Basic information

LNCipedia transcript ID: LINC00623:45 
HGNC Gene Symbol: LINC00623    
HGNC Full Gene Name: long intergenic non-protein coding RNA 623
Ensembl Gene ID: ENSG00000226067
Ensembl Transcript ID: ENST00000617702
Location (hg38): chr1:120913328-121001622
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 746 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000617702.1
Alternative gene names: ENSG00000226067.6; LINC00623


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score non-coding 
CPAT coding probability 37.42% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00623:45 no no no no

Available literature

  1. Yan (2017), Long non-coding RNA ENST00000457645 reverses cisplatin resistance in CP70 ovarian cancer cells., Genet. Mol. Res.
  2. Wang (2015), Multidrug-Resistance Related Long Non-Coding RNA Expression Profile Analysis of Gastric Cancer., PLoS ONE
  3. Wang (2014), [Effect of curcumin on radiosensitization of CNE-2 cells and its mechanism]., Zhongguo Zhong Yao Za Zhi


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 LINC00623:45
5.1 LINC00623:45
5.2 LINC00623:45