Transcript: LINC00623:51

Basic information

LNCipedia transcript ID: LINC00623:51 
LNCipedia gene ID: LINC00623
Location (hg38): chr1:120952695-120953451
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 442 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000434159.1; AL592284.1-015; OTTHUMT00000038351.1; NONHSAT005804
Alternative gene names: ENSG00000236943.1; AL592284.1; OTTHUMG00000013668.2; ENSG00000236943.2; RP11-640M9.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -32.1879 non-coding 
CPAT coding probability 2.36% non-coding 
Bazzini small ORFs 1 coding 
orfFrame6.158640473
seqAAMEREPERAPNSRTYCSPRITSSRTRQKTRRLGTLKSLEE
covF1Prop0.135135135

In stringent set: no

Locus conservation

Locus conservation?
LINC00623:51 no no no no

Available literature

  1. Yan (2017), Long non-coding RNA ENST00000457645 reverses cisplatin resistance in CP70 ovarian cancer cells., Genet. Mol. Res.
  2. Wang (2015), Multidrug-Resistance Related Long Non-Coding RNA Expression Profile Analysis of Gastric Cancer., PLoS ONE
  3. Wang (2014), [Effect of curcumin on radiosensitization of CNE-2 cells and its mechanism]., Zhongguo Zhong Yao Za Zhi


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPIAL4B-2:16
4.0 lnc-PPIAL4B-2:16
4.1 lnc-PPIAL4B-2:16
5.0 lnc-PPIAL4B-2:16
5.1 LINC00623:48
5.2 LINC00623:51