Transcript: LINC00626:1

Basic information

LNCipedia transcript ID: LINC00626:1 
HGNC Gene Symbol: LINC00626    
HGNC Full Gene Name: long intergenic non-protein coding RNA 626
Ensembl Gene ID: ENSG00000225826
Ensembl Transcript ID: ENST00000420691
Location (hg38): chr1:168786939-168792886
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 955 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000420691; ENST00000420691.1; RP1-10C16.2-001; OTTHUMT00000083615.2; NONHSAT007444
Alternative gene names: ENSG00000225826; RP1-10C16.2; ENSG00000225826.1; OTTHUMG00000034551.2; LINC00626; MGC4473


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -144.0963 non-coding 
CPAT coding probability 1.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00626:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-XCL1-1:1
3.1 lnc-XCL1-1:1
4.0 LINC00626:1
4.1 LINC00626:1
5.0 LINC00626:1
5.1 LINC00626:1
5.2 LINC00626:1