Transcript: LINC00628:1

Basic information

LNCipedia transcript ID: LINC00628:1 
LNCipedia gene ID: LINC00628
Location (hg38): chr1:204369110-204369808
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 699 bp
Exons: 1
Sources: NONCODE v4
Alternative transcript names: NONHSAT008941
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -126.7791 non-coding 
CPAT coding probability 12.55% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00628:1 yes no no no

Available literature

  1. Chen (2017), Long non-coding RNA LINC00628 suppresses the growth and metastasis and promotes cell apoptosis in breast cancer., Eur Rev Med Pharmacol Sci
  2. Zhang (2016), Long non-coding RNA LINC00628 functions as a gastric cancer suppressor via long-range modulating the expression of cell cycle related genes., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPP1R15B-2:1
4.0 LINC00628:1
4.1 LINC00628:1
5.0 LINC00628:1
5.1 LINC00628:1
5.2 LINC00628:1