Transcript: LINC00628:2

Basic information

LNCipedia transcript ID: LINC00628:2 
LNCipedia gene ID: LINC00628
RefSeq ID: NR_027022
Location (hg38): chr1:204368430-204369719
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1290 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT008940; NR_027022; NR_027022.1
Alternative gene names: ; LINC00628


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -58.5149 non-coding 
CPAT coding probability 18.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00628:2 yes no no no

Available literature

  1. Chen (2017), Long non-coding RNA LINC00628 suppresses the growth and metastasis and promotes cell apoptosis in breast cancer., Eur Rev Med Pharmacol Sci
  2. Zhang (2016), Long non-coding RNA LINC00628 functions as a gastric cancer suppressor via long-range modulating the expression of cell cycle related genes., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PPP1R15B-2:2
4.0 LINC00628:2
4.1 LINC00628:2
5.0 LINC00628:2
5.1 LINC00628:2
5.2 LINC00628:2