Transcript: LINC00628:3

Basic information

LNCipedia transcript ID: LINC00628:3 
HGNC Gene Symbol: LINC00628    
HGNC Full Gene Name: long intergenic non-protein coding RNA 628
Ensembl Gene ID: ENSG00000280924
Ensembl Transcript ID: ENST00000628516
Location (hg38): chr1:204368431-204369719
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1289 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000628516.1
Alternative gene names: ENSG00000280924.1; LINC00628;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -58.5149 non-coding 
CPAT coding probability 18.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00628:3 yes no no no

Available literature

  1. Chen (2017), Long non-coding RNA LINC00628 suppresses the growth and metastasis and promotes cell apoptosis in breast cancer., Eur Rev Med Pharmacol Sci
  2. Zhang (2016), Long non-coding RNA LINC00628 functions as a gastric cancer suppressor via long-range modulating the expression of cell cycle related genes., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC00628:3
4.1 LINC00628:3
5.0 LINC00628:3
5.1 LINC00628:3
5.2 LINC00628:3