Transcript: LINC00629:16

Basic information

LNCipedia transcript ID: LINC00629:16 
LNCipedia gene ID: LINC00629
Location (hg38): chrX:134550020-134559923
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 677 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000227060.2|ENST00000434384.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -108.2516 non-coding 
CPAT coding probability 0.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00629:16 no no no no

Available literature

  1. Muys (2016), Placenta-Enriched LincRNAs MIR503HG and LINC00629 Decrease Migration and Invasion Potential of JEG-3 Cell Line., PLoS ONE
  2. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00629:16
5.0 LINC00629:16
5.1 LINC00629:16
5.2 LINC00629:16