Transcript: LINC00635:20

Basic information

LNCipedia transcript ID: LINC00635:20 
HGNC Gene Symbol: LINC00635    
HGNC Full Gene Name: long intergenic non-protein coding RNA 635
Ensembl Gene ID: ENSG00000241469
Ensembl Transcript ID: ENST00000466155
Location (hg38): chr3:107853998-107878068
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 604 bp
Exons: 7
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005807; ENST00000466155; ENST00000466155.1; RP11-631B21.1-007; OTTHUMT00000353786.1; NONHSAT091066; ENST00000466155.5
Alternative gene names: XLOC_003208; linc-CBLB-9; ENSG00000241469; RP11-631B21.1; ENSG00000241469.1; OTTHUMG00000159195.1; ENSG00000241469.3; LINC00635; ENSG00000241469.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.8171 non-coding 
CPAT coding probability 0.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00635:20 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD47-2:11
3.1 lnc-CD47-2:10
4.0 LINC00635:20
4.1 LINC00635:20
5.0 LINC00635:20
5.1 LINC00635:20
5.2 LINC00635:20