Transcript: LINC00635:30

Basic information

LNCipedia transcript ID: LINC00635:30 
HGNC Gene Symbol: LINC00635    
HGNC Full Gene Name: long intergenic non-protein coding RNA 635
Ensembl Gene ID: ENSG00000241469
Ensembl Transcript ID: ENST00000611829
Location (hg38): chr3:107855196-107862038
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 290 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000611829.4
Alternative gene names: ENSG00000241469.7; LINC00635;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 3.5002 non-coding 
CPAT coding probability 3.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00635:30 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 LINC00635:30
4.1 LINC00635:30
5.0 LINC00635:30
5.1 LINC00635:30
5.2 LINC00635:30