Transcript: LINC00635:36

Basic information

LNCipedia transcript ID: LINC00635:36 
LNCipedia gene ID: LINC00635
Location (hg38): chr3:107841786-107842212
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 342 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00006596
Alternative gene names: XLOC_003208; linc-CBLB-9;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -712.2888 non-coding 
CPAT coding probability 2.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00635:36 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CD47-2:16
3.1 lnc-CD47-2:16
4.0 LINC00635:36
4.1 LINC00635:36
5.0 LINC00635:36
5.1 LINC00635:36
5.2 LINC00635:36