Transcript: LINC00638:2

Basic information

LNCipedia transcript ID: LINC00638:2 
HGNC Gene Symbol: LINC00638    
HGNC Full Gene Name: long intergenic non-protein coding RNA 638
Ensembl Gene ID: ENSG00000258701
Ensembl Transcript ID: ENST00000555578
RefSeq ID: NR_024396
Location (hg38): chr14:104821201-104823718
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2518 bp
Exons: 1
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000555578; ENST00000555578.1; RP11-477I4.3-001; OTTHUMT00000410373.1; NONHSAT040286; NR_024396; NR_024396.1
Alternative gene names: ENSG00000258701; RP11-477I4.3; ENSG00000258701.1; OTTHUMG00000170791.1; LINC00638; MGC23270


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 59.2071 non-coding 
CPAT coding probability 22.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
LINC00638:2 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZBTB42-1:1
3.1 lnc-ZBTB42-1:1
4.0 LINC00638:2
4.1 LINC00638:2
5.0 LINC00638:2
5.1 LINC00638:2
5.2 LINC00638:2