Transcript: LINC00639:4

Basic information

LNCipedia transcript ID: LINC00639:4 
HGNC Gene Symbol: LINC00639    
HGNC Full Gene Name: long intergenic non-protein coding RNA 639
Ensembl Gene ID: ENSG00000259070
Ensembl Transcript ID: ENST00000556116
Location (hg38): chr14:38838889-38948237
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 552 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000556116.1; RP11-566K8.2-005; OTTHUMT00000410195.1; NONHSAT036502
Alternative gene names: ENSG00000259070.1; RP11-566K8.2; OTTHUMG00000170746.1; LINC00639; ENSG00000259070.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -31.401 non-coding 
CPAT coding probability 20.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00639:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SEC23A-1:3
4.0 LINC00639:4
4.1 LINC00639:4
5.0 LINC00639:4
5.1 LINC00639:4
5.2 LINC00639:4