Transcript: LINC00642:5

Basic information

LNCipedia transcript ID: LINC00642:5 
HGNC Gene Symbol: LINC00642    
HGNC Full Gene Name: long intergenic non-protein coding RNA 642
Ensembl Gene ID: ENSG00000233208
Ensembl Transcript ID: ENST00000419459
Location (hg38): chr14:90455271-90458904
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2026 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00022396; ENST00000419459; ENST00000419459.1; AL096869.5-001; OTTHUMT00000313930.1; NONHSAT039225
Alternative gene names: XLOC_010902; linc-C14orf159-3; ENSG00000233208; AL096869.5; ENSG00000233208.1; OTTHUMG00000149923.1; LINC00642; ENSG00000233208.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -97.7286 non-coding 
CPAT coding probability 13.83% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00642:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CALM1-1:4
3.1 lnc-CALM1-1:4
4.0 LINC00642:5
4.1 LINC00642:5
5.0 LINC00642:5
5.1 LINC00642:5
5.2 LINC00642:5